Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs76071181 | chr6:24433693 | C/T | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs76071582 | chr6:122717777 | C/T | 3.52E-7 | 476 | 15.93 | 15.27 | 22.5 | KM Plot |
| THCA | rs76072955 | chr7:16465440 | A/T | 1.27E-10 | 479 | 15.13 | 17.28 | 18.82 | KM Plot |
| THCA | rs76075294 | chr6:24422742 | C/T | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs7608105 | chr2:29013005 | A/G | 0.000158 | 489 | 15.33 | 17.93 | 14.3 | KM Plot |
| THCA | rs7609124 | chr2:48337354 | A/G | 3.62E-6 | 480 | 14.7 | 16.02 | 15.7 | KM Plot |
| THCA | rs76134666 | chr3:56532829 | A/AT | 6.17E-5 | 487 | 16.63 | 13.1 | 8.97 | KM Plot |
| THCA | rs76135865 | chr13:24888802 | C/G | 0.000182 | 474 | 15 | 17.83 | 17.08 | KM Plot |
| THCA | rs7613925 | chr3:14567627 | G/C | 1.19E-6 | 490 | 16.65 | 14.97 | 14.52 | KM Plot |
| THCA | rs76148227 | chr16:2945171 | C/T | 0.000162 | 485 | 15.2 | 17.13 | 15.4 | KM Plot |
| THCA | rs76157087 | chr3:56529890 | C/A | 3.96E-6 | 486 | 16.6 | 13.5 | 8.47 | KM Plot |
| THCA | rs761758 | chr1:16325016 | C/T | 1.19E-11 | 488 | 15.2 | 18.63 | 12.63 | KM Plot |
| THCA | rs7618262 | chr3:14575443 | T/C | 1.97E-6 | 481 | 16.67 | 15 | 14.7 | KM Plot |
| THCA | rs76183373 | chr11:11853263 | C/T | 3.42E-8 | 489 | 16.33 | 14.58 | 25.47 | KM Plot |
| THCA | rs7618467 | chr3:14575646 | T/C | 7.01E-7 | 474 | 16.52 | 15 | 14.7 | KM Plot |